SMTL ID : 6i7w.1

Structure of the periplasmic binding protein (PBP) AccA in complex with 2-glucose-2-O-lactic acid phosphate (G2LP) from Agrobacterium fabrum C58

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x H6Q: 2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-beta-D-glucopyranose(Non-covalent)

H6Q.1: 16 residues within 4Å: Chain A: I.24, S.25, N.26, Y.117, W.150, N.256, Y.347, Y.348, W.390, S.391, N.392, G.393, T.402, E.406, E.482 Ligands: H6Z.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.26, A:N.26, A:N.26, A:Y.117, A:N.256, A:Y.347, A:S.391, A:G.393, A:E.406 Water bridges: A:I.24, A:Y.117, A:Y.347, A:W.395, A:E.406

1 x H6Z: 2-O-[(R)-{[(2S)-1,1-dihydroxypropan-2-yl]oxy}(hydroxy)phosphoryl]-alpha-D-glucopyranose(Non-covalent)

H6Z.2: 15 residues within 4Å: Chain A: I.24, S.25, N.26, Y.117, W.150, Y.347, Y.348, W.390, S.391, N.392, G.393, T.402, E.406, E.482 Ligands: H6Q.1 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.25, A:N.26, A:N.26, A:Y.117, A:Y.347, A:S.391, A:G.393, A:E.406 Water bridges: A:I.24, A:Y.117, A:W.395, A:E.406

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 6 residues within 4Å: Chain A: P.200, K.201, T.203, F.486, R.487, N.488 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.201, A:N.488 Water bridges: A:T.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S.Z. et al., Synthesis of a non-natural glucose-2-phosphate ester able to dupe the acc system of Agrobacterium fabrum. Org. Biomol. Chem. (2019)

Release Date

2019-01-23

Peptides

ABC transporter, substrate binding protein (Agrocinopines A and B): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ABC transporter, substrate binding protein (Agrocinopines A and B)

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