SMTL ID : 6i8w.1 (1 other biounit)

Crystal structure of a membrane phospholipase A, a novel bacterial virulence factor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x MYR: MYRISTIC ACID(Non-covalent)

MYR.1: 9 residues within 4Å: Chain A: F.71, A.73, N.77, L.79, N.136, L.214, H.286, V.287 Ligands: BOG.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.73, A:L.79, A:L.214, A:V.287 Water bridges: A:G.70, A:F.71, A:F.71 Salt bridges: A:H.286

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 12 residues within 4Å: Chain A: V.30, V.33, E.34, R.80, F.200, Q.203, P.204, P.205, L.206, P.207, L.210 Ligands: MYR.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.200, A:Q.203 Hydrogen bonds: A:E.34, A:P.205 Water bridges: A:R.80, A:R.80, A:R.80 Salt bridges: A:R.80

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.3: 6 residues within 4Å: Chain A: E.34, D.76, N.77, L.79, R.80, V.290 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.290 Hydrogen bonds: A:N.77, A:L.79, A:R.80 Water bridges: A:F.81

3 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.4: 2 residues within 4Å: Chain A: H.43, S.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.44 CO2.5: 4 residues within 4Å: Chain A: P.271, L.272, L.273, K.274 No protein-ligand interaction detected (PLIP) CO2.6: 4 residues within 4Å: Chain A: Y.89, H.132, L.304, R.308 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bleffert, F. et al., Structural, mechanistic, and physiological insights into phospholipase A-mediated membrane phospholipid degradation in Pseudomonas aeruginosa. Elife (2022)

Release Date

2019-11-27

Peptides

Alpha/beta fold hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha/beta fold hydrolase

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