SMTL ID : 6i8x.1 (1 other biounit)

As-p18, an extracellular fatty acid binding protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x VCA: VACCENIC ACID(Non-covalent)

VCA.1: 14 residues within 4Å: Chain A: Y.34, M.38, V.41, I.42, A.45, V.47, K.49, T.68, K.70, L.89, D.90, M.133, R.144, Y.146 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.42, A:A.45, A:V.47, A:T.68, A:L.89 Hydrogen bonds: A:R.144, A:Y.146 Salt bridges: A:K.49

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 9 residues within 4Å: Chain A: L.19, E.20, R.21, D.22, K.43, L.44, A.45, G.46, R.144 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.45 EDO.3: 8 residues within 4Å: Chain A: R.32, H.94, H.110, K.112, D.118, V.119, E.120, Y.122 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.32, A:D.118, A:E.120, A:Y.122 EDO.4: 5 residues within 4Å: Chain A: T.8, L.9, P.10, D.11, K.12 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.11 Water bridges: A:L.9, A:D.11, A:K.12, A:K.12 EDO.5: 1 residues within 4Å: Chain A: T.48 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.48 EDO.6: 5 residues within 4Å: Chain A: T.121, E.123, K.134, M.135, S.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.121, A:E.123 EDO.7: 3 residues within 4Å: Chain A: G.5, S.6, K.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.5 EDO.8: 5 residues within 4Å: Chain A: S.6, P.59, R.61, A.79, E.82 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.6, A:P.59, A:E.82

2 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.9: 7 residues within 4Å: Chain A: L.14, G.15, T.16, R.52, N.53, K.148, Q.149 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.16, A:K.148 TAM.10: 1 residues within 4Å: Chain A: K.70 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.70, A:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ibanez-Shimabukuro, M. et al., As-p18, an extracellular fatty acid binding protein of nematodes, exhibits unusual structural features. Biosci.Rep. (2019)

Release Date

2019-07-17

Peptides

Fatty acid-binding protein homolog: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Fatty acid-binding protein homolog

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