SMTL ID : 6ica.3 (2 other biounits)

The crystal structure of Legionella pneumophila LapA aminopeptidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.216 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.180 Salt bridges: A:K.216 SO4.6: 4 residues within 4Å: Chain A: F.209, V.210, K.211, H.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.209, A:K.211, A:H.298

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: Y.317, R.318, N.319, D.320, D.323, T.325, W.327, E.380, T.381, H.404 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.319, A:D.320, A:D.323, A:E.380 Water bridges: A:W.327, A:S.382 GOL.3: 5 residues within 4Å: Chain A: Y.173, N.174, K.179, D.180, T.181 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.174, A:D.180, A:T.181 Water bridges: A:D.180, A:D.180, A:D.180, A:D.180

2 x ZN: ZINC ION(Non-covalent)

ZN.4: 6 residues within 4Å: Chain A: H.238, D.251, E.285, E.286, D.313 Ligands: ZN.5 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.238, A:D.251, A:D.313, H2O.4, H2O.8 ZN.5: 4 residues within 4Å: Chain A: D.251, E.286, H.391 Ligands: ZN.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.251, A:E.286, A:E.286, A:H.391, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Honghua, G. et al., The crystal structure of Legionella pneumophila LapA aminopeptidase. To Be Published

Release Date

2019-11-06

Peptides

Aminopeptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Aminopeptidase

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