SMTL ID : 6ieh.1

Crystal structures of the hMTR4-NRDE2 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.89 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: M.663, L.687, R.688, P.689, R.693 Ligand excluded by PLIP

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)

ATP.2: 17 residues within 4Å: Chain A: F.75, I.76, L.77, Q.81, H.99, T.100, S.101, A.102, G.103, K.104, T.105, V.106, K.135, D.189, E.190, N.427, R.464 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:Q.81, A:Q.81, A:H.99, A:S.101, A:A.102, A:G.103, A:K.104, A:T.105, A:D.189, A:N.427, A:R.464 Salt bridges: A:K.104, A:K.104, A:K.135, A:K.135 pi-Stacking: A:F.75, A:F.75 pi-Cation interactions: A:R.464, A:R.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, J. et al., NRDE2 negatively regulates exosome functions by inhibiting MTR4 recruitment and exosome interaction. Genes Dev. (2019)

Release Date

2019-04-03

Peptides

Exosome RNA helicase MTR4: A
Protein NRDE2 homolog: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Exosome RNA helicase MTR4

Protein NRDE2 homolog