SMTL ID : 6ifc.1 (1 other biounit)

Crystal structure of VapBC from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.99 Å

Oligo State

hetero-2-1-1-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.7, T.8, N.9, D.98, I.101 Chain B: R.19 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.7, A:D.98 CA.2: 5 residues within 4Å: Chain C: D.7, T.8, N.9, D.98 Chain D: R.26 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.7, C:D.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, D. et al., Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease. Faseb J. (2020)

Release Date

2020-01-29

Peptides

tRNA(fMet)-specific endonuclease VapC: AC
Antitoxin VapB: B
Antitoxin VapB: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

tRNA(fMet)-specific endonuclease VapC

Antitoxin VapB

Antitoxin VapB

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