SMTL ID : 6ife.1

A Glycoside Hydrolase Family 43 beta-Xylosidase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.32, F.49, W.91, A.92, D.145, E.204, R.305 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.32, A:A.92, A:D.145, A:E.204, A:R.305, A:R.305 GOL.2: 8 residues within 4Å: Chain A: W.91, F.144, F.172, E.204, G.223, T.224, F.522 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.204, A:T.224 Water bridges: A:G.519 GOL.3: 7 residues within 4Å: Chain A: S.77, Q.78, L.79, D.80, D.108, Y.122, P.136 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.77, A:D.80, A:D.108, A:D.108 Water bridges: A:S.77, A:Y.122 GOL.4: 7 residues within 4Å: Chain B: S.77, Q.78, L.79, D.80, D.108, Y.122, P.136 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.77, B:D.80, B:D.108, B:D.108 Water bridges: B:Y.122 GOL.5: 7 residues within 4Å: Chain B: D.32, F.49, W.91, A.92, D.145, E.204, R.305 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:A.92, B:D.145, B:R.305, B:R.305 Water bridges: B:D.32, B:E.204, B:E.204, B:T.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., Biochemical and structural properties of a low-temperature-active glycoside hydrolase family 43 beta-xylosidase: Activity and instability at high neutral salt concentrations. Food Chem (2019)

Release Date

2019-03-13

Peptides

Beta-xylosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Beta-xylosidase