SMTL ID : 6imc.1 (3 other biounits)

Crystal Structure of ALKBH1 in complex with Mn(II) and N-Oxalylglycine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.233, D.235, H.289 Ligands: OGA.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.233, A:D.235, A:H.289, H2O.3

1 x OGA: N-OXALYLGLYCINE(Non-covalent)

OGA.2: 13 residues within 4Å: Chain A: N.222, Y.224, L.230, H.233, D.235, M.272, H.289, V.291, R.340, N.342, T.344, R.346 Ligands: MN.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.222, A:Y.224 Water bridges: A:S.247, A:R.346, A:R.346 Salt bridges: A:H.233, A:R.340, A:R.346

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, M. et al., Mammalian ALKBH1 serves as an N6-mA demethylase of unpairing DNA. Cell Res. (2020)

Release Date

2020-01-22

Peptides

Nucleic acid dioxygenase ALKBH1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleic acid dioxygenase ALKBH1

Related Entries With Identical Sequence