SMTL ID : 6ini.1

a glycosyltransferase complex with UDP and the product

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 18 residues within 4Å: Chain A: Q.23, G.24, N.27, Y.278, S.280, G.282, S.283, V.309, W.338, V.339, Q.341, H.356, G.358, W.359, N.360, S.361, E.364 Ligands: AUO.3 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.24, A:N.27, A:S.283, A:V.339, A:V.339, A:Q.341, A:N.360, A:N.360, A:S.361, A:E.364 Water bridges: A:G.282, A:S.283, A:T.284, A:T.284, A:T.284, A:Q.342, A:Q.342 Salt bridges: A:H.356, A:H.356 pi-Stacking: A:W.338

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: N.34, Y.58, L.250, S.254 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.34, A:N.34, A:S.254 Water bridges: A:S.253, A:S.254

1 x AUO: (8alpha,9beta,10alpha,13alpha)-13-{[beta-D-glucopyranosyl-(1->2)-[beta-D-glucopyranosyl-(1->3)]-beta-D-glucopyranosyl]oxy}kaur-16-en-18-oic acid(Non-covalent)

AUO.3: 23 residues within 4Å: Chain A: F.22, G.24, H.25, P.84, L.85, G.87, M.88, I.90, T.146, S.147, H.155, N.196, L.200, I.203, L.204, T.284, G.358, W.359, N.360, L.379, D.380, Q.381 Ligands: UDP.1 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.200, A:I.203, A:L.379 Hydrogen bonds: A:P.84, A:G.87, A:M.88, A:T.146, A:T.146, A:S.147, A:S.147, A:S.147, A:H.155, A:T.284, A:T.284, A:W.359, A:D.380, A:Q.381 Water bridges: A:S.147, A:H.155, A:A.193 Salt bridges: A:H.25

1 x AQ9: 1-O-[(8alpha,9beta,10alpha,13alpha)-13-(beta-D-glucopyranosyloxy)-18-oxokaur-16-en-18-yl]-beta-D-glucopyranose(Non-covalent)

AQ9.4: 11 residues within 4Å: Chain A: K.223, E.224, L.230, P.240, S.241, F.242, G.441, S.443, E.446, S.447, S.450 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.230, A:P.240 Hydrogen bonds: A:E.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, T. et al., Hydrophobic recognition allows the glycosyltransferase UGT76G1 to catalyze its substrate in two orientations. Nat Commun (2019)

Release Date

2019-07-31

Peptides

UDP-glycosyltransferase 76G1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glycosyltransferase 76G1

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