SMTL ID : 6ivv.1

Structure of peptidyl-tRNA hydrolase from Acinetobacter baumannii with multiple surface binding regions at 1.26A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.26 Å

Oligo State

monomer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: N.15, H.25, M.72, N.119 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: R.108, K.110, R.136 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: H.97, K.110, L.121, R.134, R.136 Ligand excluded by PLIP

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: S.173, K.174, Q.189 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.174 Water bridges: A:S.173, A:Q.189 EDO.5: 3 residues within 4Å: Chain A: H.170, K.174 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.173, A:S.173, A:K.174 EDO.6: 3 residues within 4Å: Chain A: W.30, E.33, Q.34 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain A: R.55, R.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.55, A:R.64, A:R.64 Water bridges: A:Y.86 EDO.8: 4 residues within 4Å: Chain A: Q.22, W.30, K.155, Q.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.30, A:K.155, A:K.155 Water bridges: A:Q.161

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.9: 1 residues within 4Å: Chain A: K.38 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, T.P. et al., Structure of peptide t-RNA hydrolase from Acinetobacter baumannii with multiple surface binding sites at 1.26 Angstrom resolution. To Be Published

Release Date

2018-12-19

Peptides

Peptidyl-tRNA hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-tRNA hydrolase

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