SMTL ID : 6iwm.1

Structural insight into probable lipid transfer mechanism of non-specific lipid transfer protein via intermediate structures in Solanum melongena

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.62, K.63, D.64, D.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.64, A:D.65, A:D.65 Water bridges: A:D.64 GOL.3: 4 residues within 4Å: Chain B: L.62, K.63, D.64, D.65 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:L.62, B:D.64, B:D.65, B:D.65 GOL.4: 1 residues within 4Å: Chain B: N.87 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.87

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: Y.59, P.60, N.61, L.62, R.84 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.61, A:L.62, A:R.84 SO4.6: 5 residues within 4Å: Chain B: Y.59, P.60, N.61, L.62, R.84 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.61, B:L.62 Salt bridges: B:R.84

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.5: 3 residues within 4Å: Chain B: G.25, A.26, A.27 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:A.26, B:A.27 Water bridges: B:C.28

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Madni, Z.K. et al., Structural insights into the lipid transfer mechanism of a non-specific lipid transfer protein. Plant J. (2020)

Release Date

2019-12-11

Peptides

Non-specific lipid-transfer protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Non-specific lipid-transfer protein

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