SMTL ID : 6ixj.1 (2 other biounits)

The crystal structure of sulfoacetaldehyde reductase from Klebsiella oxytoca

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-tetramer

Ligands

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)(Covalent)

NDP.1: 31 residues within 4Å: Chain A: G.13, A.14, T.15, S.16, G.17, F.18, G.37, R.38, R.39, L.61, D.62, V.63, R.64, N.89, A.90, G.91, L.92, T.113, I.141, G.142, S.143, Y.156, K.160, P.186, G.187, I.188, A.189, T.191, E.192, F.193 Ligands: 8X3.2 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:F.18, A:P.186 Hydrogen bonds: A:T.15, A:S.16, A:S.16, A:S.16, A:F.18, A:R.38, A:R.38, A:R.39, A:R.39, A:D.62, A:V.63, A:N.89, A:G.91, A:Y.156, A:K.160, A:A.189, A:A.189, A:T.191, A:T.191, A:E.192 Water bridges: A:N.89, A:Y.209 Salt bridges: A:R.38, A:R.39 pi-Cation interactions: A:R.38 NDP.3: 28 residues within 4Å: Chain B: G.13, A.14, T.15, S.16, G.17, F.18, R.38, R.39, L.61, D.62, V.63, R.64, N.89, A.90, G.91, T.113, I.141, G.142, S.143, Y.156, K.160, P.186, G.187, A.189, T.191, E.192, F.193 Ligands: 8X3.4 29 PLIP interactions: 29 interactions with chain B Hydrogen bonds: B:T.15, B:T.15, B:T.15, B:S.16, B:S.16, B:F.18, B:R.38, B:R.39, B:R.39, B:D.62, B:V.63, B:N.89, B:N.89, B:G.91, B:Y.156, B:K.160, B:A.189, B:A.189, B:T.191, B:T.191, B:E.192 Water bridges: B:S.16, B:S.16, B:G.19, B:G.19 Salt bridges: B:R.38, B:R.39 pi-Cation interactions: B:R.38, B:R.38 NDP.5: 28 residues within 4Å: Chain C: G.13, T.15, S.16, G.17, F.18, R.38, R.39, L.61, D.62, V.63, R.64, N.89, A.90, G.91, T.113, I.141, G.142, S.143, Y.156, K.160, P.186, G.187, I.188, A.189, T.191, E.192, F.193 Ligands: 8X3.6 21 PLIP interactions: 21 interactions with chain C Hydrophobic interactions: C:P.186 Hydrogen bonds: C:T.15, C:S.16, C:S.16, C:F.18, C:R.38, C:R.39, C:V.63, C:R.64, C:R.64, C:N.89, C:G.91, C:G.91, C:K.160, C:A.189, C:A.189, C:T.191 Water bridges: C:T.194 Salt bridges: C:R.38, C:R.39 pi-Cation interactions: C:R.38 NDP.7: 30 residues within 4Å: Chain D: G.13, A.14, T.15, S.16, G.17, F.18, G.37, R.38, R.39, L.61, D.62, V.63, R.64, N.89, A.90, G.91, T.113, I.141, G.142, S.143, Y.156, K.160, P.186, G.187, I.188, A.189, T.191, E.192, F.193 Ligands: 8X3.8 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:F.18, D:P.186 Hydrogen bonds: D:T.15, D:T.15, D:S.16, D:S.16, D:F.18, D:R.38, D:R.39, D:R.39, D:D.62, D:V.63, D:N.89, D:G.91, D:Y.156, D:K.160, D:A.189, D:A.189, D:T.191, D:T.191 Salt bridges: D:R.38, D:R.39 pi-Cation interactions: D:R.38

4 x 8X3: 2-hydroxyethylsulfonic acid(Non-covalent)

8X3.2: 6 residues within 4Å: Chain A: S.143, Y.150, Y.156, F.193, R.197 Ligands: NDP.1 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.143, A:S.143 Water bridges: A:T.194, A:R.197, A:R.197, A:R.197, A:Q.246, A:Q.246 Salt bridges: A:R.197 8X3.4: 6 residues within 4Å: Chain B: S.143, Y.150, Y.156, F.193, R.197 Ligands: NDP.3 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.143, B:S.143, B:Y.150 Water bridges: B:R.197 Salt bridges: B:R.197 8X3.6: 9 residues within 4Å: Chain C: S.143, Y.150, Y.156, G.187, I.188, F.193, R.197, Q.246 Ligands: NDP.5 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:S.143, C:Y.156, C:Y.156, C:R.197, C:Q.246 8X3.8: 9 residues within 4Å: Chain D: S.143, I.144, Y.150, Y.156, P.186, G.187, F.193, R.197 Ligands: NDP.7 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:P.186 Water bridges: D:T.194, D:R.197, D:R.197, D:R.197 Salt bridges: D:R.197

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Biochemical and structural investigation of sulfoacetaldehyde reductase fromKlebsiella oxytoca. Biochem. J. (2019)

Release Date

2019-02-13

Peptides

Sulfoacetaldehyde reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
I

Sulfoacetaldehyde reductase

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