SMTL ID : 6j3w.1 (1 other biounit)

Crystal structure of Peptidoglycan recognition protein from camel with two specific tartrate binding sites at 2.07 A resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.07 Å

Oligo State

homo-dimer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 4 residues within 4Å: Chain A: W.66, C.67, R.85, A.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.66, A:C.67 Salt bridges: A:R.85 TLA.5: 6 residues within 4Å: Chain B: G.65, W.66, C.67, R.85, A.92 Ligands: ACT.8 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:C.67 Water bridges: B:W.66 Salt bridges: B:R.85

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: R.25, N.88 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.25, A:R.25 Water bridges: A:N.88 EDO.3: 3 residues within 4Å: Chain A: S.167, H.168, R.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.168, A:R.170 EDO.4: 4 residues within 4Å: Chain A: H.37, A.39, T.152, S.154 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.37 Water bridges: A:S.154 EDO.6: 3 residues within 4Å: Chain B: P.151, T.152, L.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.151 Water bridges: B:T.152 EDO.9: 5 residues within 4Å: Chain B: S.36, H.37, Y.71, H.146, S.154 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.36, B:S.36, B:Y.71 EDO.10: 1 residues within 4Å: Chain B: C.6 No protein-ligand interaction detected (PLIP)

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 8 residues within 4Å: Chain B: W.66, A.92, H.93, A.94, G.95, N.99, Q.150 Ligands: ACT.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.94, B:G.95, B:N.99, B:N.99 ACT.8: 4 residues within 4Å: Chain B: W.66, A.92 Ligands: TLA.5, ACT.7 1 PLIP interactions: 1 interactions with chain B Water bridges: B:N.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Viswanathan, V. et al., Crystal structure of Peptidoglycan recognition protein from camel with two specific tartrate binding sites at 2.07 A resolution. To Be Published

Release Date

2019-01-30

Peptides

Peptidoglycan recognition protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidoglycan recognition protein 1

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