SMTL ID : 6j99.1

Cryo-EM structure of human DOT1L in complex with an H2B-monoubiquitinated nucleosome

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Covalent)

SAH.1: 19 residues within 4Å: Chain L: P.133, E.134, V.135, G.137, E.138, T.139, D.161, G.163, S.164, G.165, Q.168, V.169, V.185, E.186, K.187, A.188, G.221, D.222, F.223 8 PLIP interactions: 8 interactions with chain L Hydrophobic interactions: L:E.138 Hydrogen bonds: L:T.139, L:G.163, L:Q.168, L:K.187, L:A.188, L:D.222, L:F.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yao, T. et al., Structural basis of the crosstalk between histone H2B monoubiquitination and H3 lysine 79 methylation on nucleosome. Cell Res. (2019)

Release Date

2019-02-27

Peptides

Histone H3: AE
Histone H4: BF
Histone H2A: CG
Histone H2B 1.1: DH
Ubiquitin: K
Histone-lysine N-methyltransferase, H3 lysine-79 specific: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
E

B
B

F
F

C
C

G
G

D
D

H
H

K
L

L
K

Histone H3

Histone H4

Histone H2A

Histone H2B 1.1

Ubiquitin

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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