SMTL ID : 6j9s.1 (1 other biounit)

Penta mutant of Lactobacillus casei lactate dehydrogenase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: N.126, L.153, R.157, H.181, A.225, T.235 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.126 Water bridges: A:H.181 Salt bridges: A:R.157, A:H.181 SO4.2: 7 residues within 4Å: Chain A: R.159, H.174, Y.176 Chain D: S.172, H.174, G.195, G.196 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Salt bridges: A:R.159, A:H.174, D:H.174 SO4.3: 5 residues within 4Å: Chain B: L.153, R.157, H.181, A.225, T.235 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.235 Water bridges: B:N.126, B:N.126, B:N.126, B:N.126, B:N.126, B:N.126 Salt bridges: B:R.157, B:H.181 SO4.4: 7 residues within 4Å: Chain B: R.159, H.174, Y.176 Chain C: S.172, H.174, G.195, G.196 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain C Water bridges: B:H.174 Salt bridges: B:R.159, B:H.174, C:H.174 Hydrogen bonds: C:S.172 SO4.7: 6 residues within 4Å: Chain C: N.126, L.153, R.157, H.181, A.225, T.235 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.126, C:T.235 Water bridges: C:H.181 Salt bridges: C:R.157, C:H.181 SO4.8: 7 residues within 4Å: Chain B: S.172, H.174, G.195, G.196 Chain C: R.159, H.174, Y.176 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain B Water bridges: C:H.174 Salt bridges: C:R.159, C:H.174, B:H.174 SO4.9: 5 residues within 4Å: Chain D: L.153, R.157, H.181, A.225, T.235 8 PLIP interactions: 8 interactions with chain D Water bridges: D:N.126, D:N.126, D:N.126, D:N.126, D:N.126, D:N.126 Salt bridges: D:R.157, D:H.181 SO4.10: 7 residues within 4Å: Chain A: S.172, H.174, G.195, G.196 Chain D: R.159, H.174, Y.176 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain A Water bridges: D:Y.176 Salt bridges: D:R.159, D:H.174, A:H.174 Hydrogen bonds: A:S.172

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain B: I.82, A.84, G.85, A.86, N.101, I.104, L.105, I.108, L.131 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.84, B:A.86, B:N.101, B:N.101 GOL.6: 2 residues within 4Å: Chain A: F.60 Chain B: R.245 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:R.245, B:R.245 Water bridges: C:D.169 GOL.11: 9 residues within 4Å: Chain D: I.82, A.84, G.85, A.86, N.101, I.104, L.105, I.108, L.131 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:A.84, D:A.86, D:N.101, D:N.101 GOL.12: 2 residues within 4Å: Chain C: F.60 Chain D: R.245 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:R.245, D:R.245 Water bridges: A:D.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arai, K. et al., Crystal structure of penta mutant of L-lactate dehydrogenase from Lactobacillus casei. To Be Published

Release Date

2019-02-06

Peptides

L-lactate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

L-lactate dehydrogenase

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