SMTL ID : 6j9t.1 (1 other biounit)

Complex structure of Lactobacillus casei lactate dehydrogenase with fructose-1,6-bisphosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: N.126, L.153, R.157, H.181, A.225, T.235 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.126 Salt bridges: A:R.157, A:H.181 SO4.2: 5 residues within 4Å: Chain B: L.153, R.157, H.181, A.225, T.235 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.235 Salt bridges: B:R.157, B:H.181 SO4.4: 6 residues within 4Å: Chain C: N.126, L.153, R.157, H.181, A.225, T.235 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.126, C:T.235 Salt bridges: C:R.157, C:H.181 SO4.5: 5 residues within 4Å: Chain D: L.153, R.157, H.181, A.225, T.235 2 PLIP interactions: 2 interactions with chain D Salt bridges: D:R.157, D:H.181

2 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)

FBP.3: 12 residues within 4Å: Chain B: R.159, R.171, V.173, H.174, Y.176, G.195 Chain C: R.159, R.171, H.174, Y.176, G.195, V.257 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Salt bridges: C:R.159, C:H.174, C:H.174, B:R.159, B:H.174, B:H.174 FBP.6: 12 residues within 4Å: Chain A: R.159, R.171, H.174, Y.176, G.195, V.257 Chain D: R.159, R.171, V.173, H.174, Y.176, G.195 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain A Salt bridges: D:R.159, D:H.174, D:H.174, A:R.159, A:H.174, A:H.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arai, K. et al., Crystal structure of penta mutant of L-lactate dehydrogenase from Lactobacillus casei. To Be Published

Release Date

2019-02-06

Peptides

L-lactate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

L-lactate dehydrogenase

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