SMTL ID : 6j9v.1

Crystal structure of Trypanosoma brucei gambiense glycerol kinase complex with ADP.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 8 residues within 4Å: Chain A: G.281, T.282, G.327, I.343, G.427, G.428, L.429, K.431 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.282, A:G.428 ADP.3: 8 residues within 4Å: Chain B: M.7, Y.9, D.26, R.28, V.32, L.71, K.74, D.75 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.9, B:D.26, B:D.26, B:R.28, B:R.28 Salt bridges: B:R.28 pi-Cation interactions: B:R.28

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: Q.89, R.90, E.91, W.110, D.260, Q.261, F.285 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.90, A:R.90, A:E.91, A:D.260, A:Q.261 GOL.4: 6 residues within 4Å: Chain B: R.90, E.91, W.110, D.260, Q.261, F.285 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.90, B:R.90, B:E.91, B:D.260, B:Q.261 GOL.5: 3 residues within 4Å: Chain B: T.17, T.18, S.19 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:T.17, B:T.17, B:T.18, B:T.18, B:S.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Balogun, E.O. et al., Reaction mechanism of the reverse reaction of African human trypanosomes glycerol kinase. To Be Published

Release Date

2020-01-29

Peptides

Glycerol kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycerol kinase

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