SMTL ID : 6jda.1

Crystal structure of N-acetyl mannosmaine kinase in complex with N-acetylmannosamine in Pasteurella multocida

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x BM3: 2-acetamido-2-deoxy-alpha-D-mannopyranose(Non-covalent)

BM3.1: 16 residues within 4Å: Chain A: T.63, G.64, A.73, L.74, N.75, N.78, L.79, N.103, D.104, V.105, S.130, G.132, V.133, H.153, H.156, E.175 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.73, A:L.79 Hydrogen bonds: A:G.64, A:L.74, A:N.75, A:N.103, A:N.103, A:S.130, A:V.133, A:H.153 Salt bridges: A:H.156 BM3.4: 16 residues within 4Å: Chain B: T.63, G.64, A.73, L.74, N.75, N.78, L.79, N.103, D.104, V.105, S.130, G.132, V.133, H.153, H.156, E.175 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:A.73, B:L.79 Hydrogen bonds: B:G.64, B:L.74, B:N.75, B:N.103, B:N.103, B:S.130, B:V.133, B:H.153 Salt bridges: B:H.156

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.156, C.166, C.168, C.173 Chain B: Y.264 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.156, A:C.166, A:C.168, A:C.173 ZN.5: 5 residues within 4Å: Chain A: Y.264 Chain B: H.156, C.166, C.168, C.173 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.156, B:C.166, B:C.168, B:C.173

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: G.9, G.10, T.11, K.12, S.130, T.131, S.242 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.10, A:T.11, A:K.12, A:S.130, A:T.131, A:T.131, A:S.242 GOL.6: 7 residues within 4Å: Chain B: G.9, G.10, T.11, K.12, S.130, T.131, S.242 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.10, B:T.11, B:K.12, B:S.130, B:T.131, B:T.131, B:S.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thanuja, G. et al., Structure and Function of N‐Acetylmannosamine Kinases from Pathogenic Bacteria. Acs Omega (2020)

Release Date

2020-02-05

Peptides

N-acetylmannosamine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

N-acetylmannosamine kinase