SMTL ID : 6jkz.1

Crystal structure of VvPlpA from Vibrio vulnificus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: W.174, G.390, V.391, T.392, H.393 Ligand excluded by PLIP

2 x 1PS: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE(Non-covalent)

1PS.2: 8 residues within 4Å: Chain A: K.88, T.131, N.159, N.199, W.200, V.202, S.223, Y.227 6 PLIP interactions: 6 interactions with chain A Water bridges: A:K.88, A:T.215, A:T.215, A:S.223 Salt bridges: A:K.88 pi-Stacking: A:W.200 1PS.3: 5 residues within 4Å: Chain A: Y.46, W.66, Y.74, D.123, R.125 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.46, A:W.66, A:W.66, A:W.66, A:Y.74 Water bridges: A:Y.46 pi-Stacking: A:Y.46, A:Y.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wan, Y. et al., Structural analysis of aVibriophospholipase reveals an unusual Ser-His-chloride catalytic triad. J.Biol.Chem. (2019)

Release Date

2019-05-15

Peptides

Thermolabile hemolysin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Thermolabile hemolysin

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