SMTL ID : 6jm9.1

cryo-EM structure of DOT1L bound to unmodified nucleosome

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-2-2-1-mer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Covalent)

SAM.1: 21 residues within 4Å: Chain K: P.129, V.131, Y.132, G.133, E.134, T.135, D.157, G.159, S.160, G.161, V.181, E.182, K.183, A.184, D.218, F.219, L.220, S.221, F.235, N.237, F.241 11 PLIP interactions: 11 interactions with chain K Hydrogen bonds: K:V.131, K:G.133, K:E.134, K:K.183, K:A.184, K:D.218, K:N.237 Salt bridges: K:E.182 pi-Stacking: K:F.219, K:F.219, K:F.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jang, S. et al., Structural basis of recognition and destabilization of the histone H2B ubiquitinated nucleosome by the DOT1L histone H3 Lys79 methyltransferase. Genes Dev. (2019)

Release Date

2019-05-15

Peptides

Histone H3.2: CG
Histone H4: DH
Histone H2A: EI
Histone H2B 1.1: FJ
Histone-lysine N-methyltransferase, H3 lysine-79 specific: K

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

G
E

D
B

H
F

E
C

I
G

F
D

J
H

K
X

Histone H3.2

Histone H4

Histone H2A

Histone H2B 1.1

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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