SMTL ID : 6jmw.2 (1 other biounit)

Structure of the Chromium Protoporphyrin IX-Reconstituted CYP102A1 Haem Domain with N-Abietoyl-L-Tryptophan

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x BW9: Chromium Protoporphyrin IX(Non-covalent)

BW9.1: 24 residues within 4Å: Chain A: K.101, L.107, L.118, F.119, W.128, F.139, I.185, T.292, A.296, T.300, T.301, L.304, T.359, A.360, F.363, P.424, F.425, G.426, R.430, A.431, C.432, I.433, G.434, A.438 24 PLIP interactions: 23 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:L.118, A:F.119, A:F.119, A:F.139, A:I.185, A:T.292, A:A.296, A:T.300, A:L.304, A:A.360, A:F.425, A:I.433, A:A.438 Hydrogen bonds: A:R.430 Water bridges: A:K.101, A:K.101, A:H.132, A:S.364, A:S.364, A:S.364 Salt bridges: A:K.101, A:R.430 Metal complexes: A:C.432, H2O.7

1 x WAA: (2S)-2-[[(1R,4aR,4bR,10aR)-1,4a-dimethyl-7-propan-2-yl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-1-yl]carbonylamino]-3-( 1H-indol-3-yl)propanoic acid(Non-covalent)

WAA.2: 17 residues within 4Å: Chain A: L.52, P.57, V.58, L.61, R.79, Y.83, S.104, Q.105, A.106, L.107, V.110, F.119, M.217, L.220, A.362, M.386, L.469 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.52, A:P.57, A:V.58, A:L.61, A:Q.105, A:Q.105, A:A.106, A:L.107, A:V.110, A:F.119, A:A.362, A:L.469 Hydrogen bonds: A:R.79, A:Y.83, A:Q.105, A:A.106, A:L.220 pi-Cation interactions: A:R.79

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 3 residues within 4Å: Chain A: R.111, G.115, D.116 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.111, A:R.111, A:Y.288, A:Y.288 GOL.4: 5 residues within 4Å: Chain A: I.398, R.410, A.416, I.417, P.418 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.398, A:R.410 Water bridges: A:I.398 GOL.5: 7 residues within 4Å: Chain A: K.423, F.425, G.426, N.427, G.428, A.431, Q.435 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.423, A:G.428, A:Q.435, A:Q.435 Water bridges: A:H.420, A:F.422, A:G.426, A:N.427

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stanfield, J.K. et al., Crystals in Minutes: Instant On-Site Microcrystallisation of Various Flavours of the CYP102A1 (P450BM3) Haem Domain. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-03-18

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Bifunctional cytochrome P450/NADPH--P450 reductase

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