SMTL ID : 6jo3.1

Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with substrate sn-glycerol-1-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x 1GP: SN-GLYCEROL-1-PHOSPHATE(Non-covalent)

1GP.1: 14 residues within 4Å: Chain A: L.21, F.78, Y.171, E.173, G.175, S.176, G.177, G.201, G.202, G.203, V.222, T.223, G.224, T.225 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:E.173, A:G.175, A:G.177, A:G.202, A:G.203, A:G.224, A:T.225 Water bridges: A:I.204, A:I.204, A:T.225, A:T.225, A:I.226 1GP.2: 14 residues within 4Å: Chain B: L.21, F.78, Y.171, E.173, G.175, S.176, G.177, G.201, G.202, G.203, V.222, T.223, G.224, T.225 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:Y.171, B:E.173, B:G.175, B:G.177, B:G.202, B:G.203, B:G.224, B:T.225, B:T.225 Water bridges: B:I.204, B:I.204, B:I.226

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nemoto, N. et al., Crystal structure of (S)-3-O-geranylgeranylglyceryl phosphate synthase from Thermoplasma acidophilum in complex with the substrate sn-glycerol 1-phosphate. Acta Crystallogr.,Sect.F (2019)

Release Date

2019-04-03

Peptides

Geranylgeranylglyceryl phosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Geranylgeranylglyceryl phosphate synthase