SMTL ID : 6jq9.1 (1 other biounit)

Crystal structure of a lyase from Alteromonas sp.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.174, D.184, K.186 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.174, A:D.184, H2O.1, H2O.9, H2O.10 CA.2: 3 residues within 4Å: Chain A: N.285, D.288, F.290 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:N.285, A:F.290, H2O.5, H2O.9, H2O.9

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: H.339, T.340, A.341, S.344, R.374 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:T.340, A:A.341, A:S.344 Water bridges: A:D.338, A:H.339, A:T.340, A:D.376 Salt bridges: A:H.339, A:R.374 SO4.4: 5 residues within 4Å: Chain A: F.98, R.99, H.129, R.139, F.140 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.99, A:H.129, A:R.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qin, H.M. et al., Biochemical characterization and structural analysis of ulvan lyase from marine Alteromonas sp. reveals the basis for its salt tolerance. Int.J.Biol.Macromol. (2020)

Release Date

2020-04-01

Peptides

Short ulvan lyase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Short ulvan lyase

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