- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x GLN: GLUTAMINE(Non-covalent)
GLN.2: 14 residues within 4Å:- Chain A: G.1100, G.1101, F.1102, D.1106, C.1143, N.1144, Q.1147, F.1173, S.1203, H.1204, G.1205, E.1206, H.1268, R.1271
10 PLIP interactions:10 interactions with chain A,- Hydrophobic interactions: A:N.1144
- Hydrogen bonds: A:G.1101, A:D.1106, A:N.1144, A:Q.1147, A:Q.1147, A:G.1205, A:E.1206, A:H.1268, A:R.1271
- 12 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: H.910, C.911, A.968, G.969, R.986, D.1020
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:G.969, A:G.969, A:R.986, A:D.1020
- Water bridges: A:D.1020
GOL.4: 4 residues within 4Å:- Chain A: Q.775, D.867, V.868, A.869
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.775, A:Q.775, A:D.867, A:V.868, A:A.869
GOL.5: 6 residues within 4Å:- Chain A: V.624, Q.625, L.627, P.755, G.756, D.758
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.625, A:Q.625, A:G.756
GOL.6: 4 residues within 4Å:- Chain A: A.919, V.960, H.961, Y.962
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.960, A:Y.962
- Water bridges: A:R.944
GOL.7: 7 residues within 4Å:- Chain A: I.1156, P.1157, G.1158, S.1159, E.1160, E.1258
- Ligands: EDO.20
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.1158, A:S.1159, A:S.1159, A:E.1160, A:E.1258
- Water bridges: A:L.1161
GOL.8: 3 residues within 4Å:- Chain A: D.258, Y.259, E.272
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.258, A:Y.259, A:E.272
GOL.9: 5 residues within 4Å:- Chain A: F.246, Y.264, V.782, G.783
- Ligands: EDO.25
3 PLIP interactions:3 interactions with chain A- Water bridges: A:Y.264, A:G.783, A:G.783
GOL.10: 3 residues within 4Å:- Chain A: G.921, D.922, D.923
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:D.922, A:D.923
- Water bridges: A:G.842, A:G.842, A:N.844, A:N.844, A:N.844
GOL.11: 5 residues within 4Å:- Chain A: E.272, S.274, A.275, P.294, H.296
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.272, A:E.272, A:A.275
- Water bridges: A:H.296
GOL.14: 4 residues within 4Å:- Chain A: K.1236, V.1237, T.1238, E.1239
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.1238, A:E.1239
- Water bridges: A:E.1239
GOL.31: 7 residues within 4Å:- Chain A: E.656, T.658, M.677, W.681, Q.682, E.1013, K.1017
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:T.658, A:R.990, A:K.1017
- Water bridges: A:W.681, A:R.1176
GOL.35: 5 residues within 4Å:- Chain A: A.717, R.721, D.763, A.767, E.771
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.721, A:R.721, A:D.763
- Water bridges: A:R.721, A:E.771
- 23 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.12: 7 residues within 4Å:- Chain A: G.449, P.450, M.452, R.480, S.555, Q.556, R.558
Ligand excluded by PLIPEDO.13: 3 residues within 4Å:- Chain A: W.1280, P.1282, E.1283
Ligand excluded by PLIPEDO.15: 4 residues within 4Å:- Chain A: V.440, T.589, E.590, E.591
Ligand excluded by PLIPEDO.16: 2 residues within 4Å:- Chain A: R.944, Y.962
Ligand excluded by PLIPEDO.17: 3 residues within 4Å:- Chain A: R.820, H.821, R.885
Ligand excluded by PLIPEDO.18: 3 residues within 4Å:- Chain A: F.253, E.254, P.257
Ligand excluded by PLIPEDO.19: 7 residues within 4Å:- Chain A: K.841, Q.870, G.955, L.956, A.957, D.958, C.959
Ligand excluded by PLIPEDO.20: 3 residues within 4Å:- Chain A: H.1133, P.1157
- Ligands: GOL.7
Ligand excluded by PLIPEDO.21: 5 residues within 4Å:- Chain A: R.23, E.376, L.379, R.1004, R.1172
Ligand excluded by PLIPEDO.22: 3 residues within 4Å:- Chain A: F.1031, Q.1191, R.1293
Ligand excluded by PLIPEDO.23: 6 residues within 4Å:- Chain A: H.224, C.225, H.227, K.784
- Ligands: EDO.25, SO4.46
Ligand excluded by PLIPEDO.24: 5 residues within 4Å:- Chain A: T.255, K.740, P.774, Q.775, G.777
Ligand excluded by PLIPEDO.25: 9 residues within 4Å:- Chain A: N.267, K.300, E.302, D.326, G.783, K.784
- Ligands: GOL.9, EDO.23, SO4.46
Ligand excluded by PLIPEDO.26: 5 residues within 4Å:- Chain A: I.180, N.183, L.184, E.192, I.195
Ligand excluded by PLIPEDO.27: 5 residues within 4Å:- Chain A: D.537, V.584, I.585, G.586, D.587
Ligand excluded by PLIPEDO.28: 4 residues within 4Å:- Chain A: R.971, S.983, E.984, S.985
Ligand excluded by PLIPEDO.29: 1 residues within 4Å:- Chain A: H.843
Ligand excluded by PLIPEDO.30: 4 residues within 4Å:- Chain A: M.464, A.465, K.790, R.792
Ligand excluded by PLIPEDO.32: 7 residues within 4Å:- Chain A: A.752, G.753, H.754, P.755, K.790, R.792, E.801
Ligand excluded by PLIPEDO.33: 7 residues within 4Å:- Chain A: H.304, R.325, G.512, A.513, E.554, Q.556
- Ligands: SO4.46
Ligand excluded by PLIPEDO.34: 3 residues within 4Å:- Chain A: E.358, E.359, R.856
Ligand excluded by PLIPEDO.36: 3 residues within 4Å:- Chain A: H.140, R.142, E.145
Ligand excluded by PLIPEDO.37: 3 residues within 4Å:- Chain A: G.1045, A.1046, R.1047
Ligand excluded by PLIP- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
MG.38: 4 residues within 4Å:- Chain A: D.687, N.730, D.892
- Ligands: ADP.1
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.687, A:D.892, H2O.11, H2O.25
MG.39: 1 residues within 4Å:- Ligands: ADP.1
No protein-ligand interaction detected (PLIP)MG.40: 2 residues within 4Å:- Chain A: E.726
- Ligands: ADP.1
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:E.726, H2O.6, H2O.10, H2O.11, H2O.21
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.41: 7 residues within 4Å:- Chain A: H.224, T.303, H.304, N.305, H.306, S.462, S.786
Ligand excluded by PLIPSO4.42: 5 residues within 4Å:- Chain A: H.1094, R.1134, P.1135, Q.1136, T.1137
Ligand excluded by PLIPSO4.43: 3 residues within 4Å:- Chain A: W.313, R.1167, R.1172
Ligand excluded by PLIPSO4.44: 3 residues within 4Å:- Chain A: G.1235, K.1236, V.1237
Ligand excluded by PLIPSO4.45: 2 residues within 4Å:- Chain A: N.1121, R.1123
Ligand excluded by PLIPSO4.46: 8 residues within 4Å:- Chain A: H.224, E.302, G.512, A.513, K.784
- Ligands: EDO.23, EDO.25, EDO.33
Ligand excluded by PLIPSO4.47: 4 residues within 4Å:- Chain A: P.1048, K.1049, N.1092, H.1094
Ligand excluded by PLIPSO4.48: 5 residues within 4Å:- Chain A: Q.1184, Q.1191, G.1192, M.1193, V.1194
Ligand excluded by PLIPSO4.49: 2 residues within 4Å:- Chain A: T.640, I.641
Ligand excluded by PLIPSO4.50: 5 residues within 4Å:- Chain A: S.20, A.21, F.22, N.1006, H.1169
Ligand excluded by PLIPSO4.51: 5 residues within 4Å:- Chain A: P.364, E.365, R.366, Q.468, W.793
Ligand excluded by PLIPSO4.52: 3 residues within 4Å:- Chain A: K.841, H.843, R.866
Ligand excluded by PLIPSO4.53: 3 residues within 4Å:- Chain A: H.160, H.161, Q.162
Ligand excluded by PLIPSO4.54: 2 residues within 4Å:- Chain A: N.1259, R.1261
Ligand excluded by PLIPSO4.55: 5 residues within 4Å:- Chain A: R.226, K.228, N.231, T.617, K.619
Ligand excluded by PLIPSO4.56: 3 residues within 4Å:- Chain A: S.75, H.76, T.77
Ligand excluded by PLIPSO4.57: 4 residues within 4Å:- Chain A: Q.62, L.1119, F.1120, H.1122
Ligand excluded by PLIPSO4.58: 3 residues within 4Å:- Chain A: H.8, I.159, H.160
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sharma, N. et al., Role of allosteric switches and adaptor domains in long-distance cross-talk and transient tunnel formation. Sci Adv (2020)
- Release Date
- 2020-03-04
- Peptides
- Phosphoribosylformylglycinamidine synthase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- monomer
- Ligands
- 1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x GLN: GLUTAMINE(Non-covalent)
- 12 x GOL: GLYCEROL(Non-functional Binders)
- 23 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
- 18 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sharma, N. et al., Role of allosteric switches and adaptor domains in long-distance cross-talk and transient tunnel formation. Sci Adv (2020)
- Release Date
- 2020-03-04
- Peptides
- Phosphoribosylformylglycinamidine synthase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A