SMTL ID : 6jtc.2 (1 other biounit)

Crystal structure of dipeptidyl peptidase 11 (DPP11) with SH-5 from Porphyromonas gingivalis (Space)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.39 Å

Oligo State

monomer

Ligands

1 x C8O: 2-(2-azanylethylamino)-5-nitro-benzoic acid(Non-covalent)

C8O.1: 11 residues within 4Å: Chain A: N.218, W.219, T.650, T.651, G.652, N.654, S.655, N.670, F.671, D.672, R.673 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.673 Hydrogen bonds: A:N.218, A:N.218, A:G.652, A:D.672 Salt bridges: A:R.337, A:R.673

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sakamoto, Y. et al., Fragment-based discovery of the first nonpeptidyl inhibitor of an S46 family peptidase. Sci Rep (2019)

Release Date

2019-10-02

Peptides

Asp/Glu-specific dipeptidyl-peptidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Asp/Glu-specific dipeptidyl-peptidase

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