SMTL ID : 6jwp.1 (1 other biounit)

crystal structure of EGOC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 22 residues within 4Å: Chain A: S.17, G.18, S.19, G.20, K.21, S.22, S.23, R.38, A.42, T.43, C.64, G.65, G.66, Q.67, H.128, K.129, D.131, L.132, S.167, I.168, W.169 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.17, A:G.18, A:S.19, A:G.20, A:K.21, A:K.21, A:S.22, A:S.23, A:S.23, A:T.43, A:T.43, A:T.43, A:C.64, A:G.66, A:Q.67, A:K.129, A:K.129, A:I.168 Salt bridges: A:D.131 GNP.3: 18 residues within 4Å: Chain B: R.22, R.23, C.24, G.25, K.26, S.27, S.28, T.42, L.43, S.47, T.48, E.66, P.68, H.128, K.129, D.131, I.170 Ligands: MG.4 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:R.23, B:R.23, B:C.24, B:G.25, B:K.26, B:K.26, B:S.27, B:S.28, B:S.28, B:T.42, B:T.42, B:T.48, B:T.48, B:T.48, B:P.68, B:K.129, B:I.170 Salt bridges: B:R.23, B:D.131

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: S.22, G.41, A.42, T.43 Ligands: GNP.1 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:S.22, A:G.41, A:T.43 MG.4: 5 residues within 4Å: Chain B: R.23, S.27, T.48, E.66 Ligands: GNP.3 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.27, B:T.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, T. et al., Structural insights into the EGO-TC-mediated membrane tethering of the TORC1-regulatory Rag GTPases. Sci Adv (2019)

Release Date

2019-12-11

Peptides

GTP-binding protein GTR1: A
GTP-binding protein GTR2: B
Protein MEH1: C
Ego2: D
Protein SLM4: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

GTP-binding protein GTR1

GTP-binding protein GTR2

Protein MEH1

Ego2

Protein SLM4

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