SMTL ID : 6jyu.1

Crystal structure of Human G6PD Canton

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 18 residues within 4Å: Chain A: K.210, E.336, K.338, R.342, R.365, N.369, A.371, Y.373, K.375, D.393, T.395, R.459, D.465, M.468, F.473, Y.475, Y.479, W.481 34 PLIP interactions: 34 interactions with chain A Hydrogen bonds: A:E.336, A:R.342, A:R.365, A:R.365, A:Y.373, A:D.393, A:R.459, A:R.459 Water bridges: A:T.208, A:T.208, A:K.210, A:K.210, A:K.338, A:K.338, A:R.365, A:Y.373, A:K.375, A:D.465, A:G.477, A:W.481 Salt bridges: A:K.210, A:K.338, A:R.342, A:R.342, A:K.375, A:K.375, A:R.459 pi-Stacking: A:Y.373, A:Y.475, A:Y.475, A:W.481, A:W.481 pi-Cation interactions: A:R.459, A:R.459 NAP.2: 18 residues within 4Å: Chain B: K.210, E.336, K.338, R.342, R.365, N.369, A.371, Y.373, K.375, D.393, T.395, R.459, D.465, M.468, F.473, Y.475, Y.479, W.481 33 PLIP interactions: 33 interactions with chain B Hydrogen bonds: B:R.342, B:R.365, B:R.365, B:D.393, B:R.459, B:R.459 Water bridges: B:K.210, B:K.210, B:K.338, B:K.338, B:R.365, B:Y.373, B:Y.373, B:K.375, B:D.465, B:D.465, B:Y.475, B:G.477, B:W.481 Salt bridges: B:K.210, B:K.338, B:R.342, B:R.342, B:K.375, B:K.375, B:R.459 pi-Stacking: B:Y.373, B:Y.475, B:Y.475, B:W.481, B:W.481 pi-Cation interactions: B:R.459, B:R.459

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Au, S.W.N., Crystal structure of Human G6PD Canton. To Be Published

Release Date

2020-04-29

Peptides

Glucose-6-phosphate 1-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glucose-6-phosphate 1-dehydrogenase