SMTL ID : 6jzs.2 (1 other biounit)

Structure of the Manganese Protoporphyrin IX-Reconstituted CYP102A1 Haem Domain with N-Abietoyl-L-Tryptophan in complex with Pyridine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.68 Å

Oligo State

monomer

Ligands

2 x 0PY: pyridine(Non-covalent)

0PY.1: 7 residues within 4Å: Chain A: F.119, A.296, T.300, A.360, L.469 Ligands: WAA.3, MNH.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.296, A:T.300, A:L.469 pi-Stacking: A:F.119 0PY.2: 9 residues within 4Å: Chain A: F.190, Y.192, F.194, H.203, F.205, L.247, V.248, I.251, L.294 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.190, A:F.190, A:F.194, A:F.194, A:F.205, A:F.205, A:V.248, A:L.294 Water bridges: A:I.251 pi-Stacking: A:Y.192

1 x WAA: (2S)-2-[[(1R,4aR,4bR,10aR)-1,4a-dimethyl-7-propan-2-yl-2,3,4,4b,5,6,10,10a-octahydrophenanthren-1-yl]carbonylamino]-3-( 1H-indol-3-yl)propanoic acid(Non-covalent)

WAA.3: 18 residues within 4Å: Chain A: L.52, P.57, V.58, L.61, A.76, R.79, Y.83, S.104, Q.105, A.106, L.107, F.119, M.217, L.220, A.362, M.386, L.469 Ligands: 0PY.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:L.52, A:P.57, A:V.58, A:L.61, A:A.76, A:R.79, A:A.106, A:L.107, A:F.119, A:F.119, A:L.220, A:A.362, A:L.469 Hydrogen bonds: A:Q.105, A:A.106, A:L.220 Salt bridges: A:R.79 pi-Cation interactions: A:R.79

1 x MNH: MANGANESE PROTOPORPHYRIN IX(Non-covalent)

MNH.4: 23 residues within 4Å: Chain A: K.101, L.107, L.118, F.119, W.128, I.185, F.293, A.296, T.300, T.301, T.359, A.360, F.363, P.424, F.425, G.426, R.430, A.431, C.432, I.433, G.434, A.438 Ligands: 0PY.1 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:L.118, A:F.119, A:I.185, A:F.293, A:A.296, A:T.300, A:A.360, A:F.425, A:I.433, A:A.438 Hydrogen bonds: A:R.430 Water bridges: A:K.101, A:K.101, A:S.364, A:S.364, A:S.364 Salt bridges: A:K.101, A:R.430 Metal complexes: A:C.432

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 9 residues within 4Å: Chain A: W.162, E.163, L.165, N.166, A.167, A.480, K.481, S.482, K.484 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.162, A:N.166, A:S.482, A:K.484, A:K.484 Water bridges: A:A.480 GOL.6: 5 residues within 4Å: Chain A: D.100, T.123, H.124, Y.366, K.368 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.368, A:Q.429 Water bridges: A:E.96, A:D.100 GOL.7: 1 residues within 4Å: Chain A: K.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.41 Water bridges: A:T.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stanfield, J.K. et al., Crystals in Minutes: Instant On-Site Microcrystallisation of Various Flavours of the CYP102A1 (P450BM3) Haem Domain. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-03-18

Peptides

Bifunctional cytochrome P450/NADPH--P450 reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Bifunctional cytochrome P450/NADPH--P450 reductase

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