- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 28 residues within 4Å:- Chain A: G.8, A.10, G.11, F.12, I.13, D.32, N.33, Y.34, G.35, N.36, S.37, G.58, D.59, V.60, R.61, F.81, A.82, G.83, K.85, N.100, S.123, S.124, S.125, Y.150, K.154, Y.178, F.179, P.181
29 PLIP interactions:29 interactions with chain A- Hydrophobic interactions: A:Y.178
- Hydrogen bonds: A:G.8, A:F.12, A:I.13, A:N.33, A:N.33, A:Y.34, A:G.35, A:N.36, A:N.36, A:S.37, A:V.60, A:F.81, A:G.83, A:K.85, A:N.100, A:N.100, A:S.123, A:K.154, A:F.179
- Water bridges: A:G.11, A:A.14, A:L.84, A:K.85, A:K.154, A:E.192, A:N.200
- Salt bridges: A:K.85, A:K.85
NAD.5: 28 residues within 4Å:- Chain B: G.8, A.10, G.11, F.12, I.13, D.32, N.33, Y.34, G.35, N.36, S.37, G.58, D.59, V.60, R.61, F.81, A.82, G.83, K.85, N.100, S.123, S.124, S.125, Y.150, K.154, Y.178, F.179, P.181
32 PLIP interactions:32 interactions with chain B- Hydrophobic interactions: B:Y.178
- Hydrogen bonds: B:G.8, B:F.12, B:I.13, B:N.33, B:Y.34, B:G.35, B:N.36, B:N.36, B:S.37, B:V.60, B:F.81, B:G.83, B:K.85, B:N.100, B:N.100, B:S.123, B:Y.150, B:K.154, B:F.179
- Water bridges: B:G.11, B:A.14, B:N.33, B:N.33, B:N.33, B:L.84, B:K.85, B:K.154, B:E.192, B:N.200
- Salt bridges: B:K.85, B:K.85
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 3 residues within 4Å:- Chain A: E.67, K.114, H.115
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:E.67, A:H.115, H2O.12
MG.6: 3 residues within 4Å:- Chain B: E.67, K.114, H.115
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:E.67, B:H.115, H2O.27
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nam, Y.W. et al., Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum. Sci Rep (2019)
- Release Date
- 2019-08-07
- Peptides
- UDP-glucose 4-epimerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nam, Y.W. et al., Structural basis for broad substrate specificity of UDP-glucose 4-epimerase in the human milk oligosaccharide catabolic pathway of Bifidobacterium longum. Sci Rep (2019)
- Release Date
- 2019-08-07
- Peptides
- UDP-glucose 4-epimerase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A