SMTL ID : 6k1f.1

Crystal structure of the L-fucose isomerase from Raoultella sp.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-hexamer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: E.358, D.382, S.414, H.549 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.358, A:D.382, A:H.549 MN.2: 4 residues within 4Å: Chain B: E.358, D.382, N.548, H.549 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.358, B:D.382, B:H.549, H2O.7 MN.3: 5 residues within 4Å: Chain C: E.358, D.382, N.413, S.414, H.549 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.358, C:D.382, C:H.549, H2O.18 MN.4: 4 residues within 4Å: Chain D: E.358, D.382, N.548, H.549 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.358, D:D.382, D:H.549 MN.5: 4 residues within 4Å: Chain E: E.358, D.382, N.548, H.549 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.358, E:D.382, E:H.549 MN.6: 4 residues within 4Å: Chain F: E.358, D.382, S.414, H.549 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:E.358, F:E.358, F:D.382, F:H.549

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, I.J. et al., Enzymatic synthesis of l-fucose from l-fuculose using a fucose isomerase fromRaoultellasp. and the biochemical and structural analyses of the enzyme. Biotechnol Biofuels (2019)

Release Date

2020-05-13

Peptides

L-fucose isomerase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

L-fucose isomerase

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