SMTL ID : 6k5z.1

Structure of uridylyltransferase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.33 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.30, C.33, H.86, H.138 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.30, A:C.33, A:H.86, A:H.138 ZN.2: 4 residues within 4Å: Chain A: C.170, C.173, H.211, H.264 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.170, A:C.173, A:H.211, A:H.264 ZN.5: 4 residues within 4Å: Chain B: C.30, C.33, H.86, H.138 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.30, B:C.33, B:H.86, B:H.138 ZN.6: 4 residues within 4Å: Chain B: C.170, C.173, H.211, H.264 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.170, B:C.173, B:H.211, B:H.264

2 x FE: FE (III) ION(Non-covalent)

FE.3: 4 residues within 4Å: Chain A: E.156, H.252, H.266, E.268 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.156, A:H.252, A:H.266, A:E.268, H2O.1 FE.7: 4 residues within 4Å: Chain B: E.156, H.252, H.266, E.268 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.156, B:E.156, B:H.252, B:H.266, B:E.268

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 6 residues within 4Å: Chain A: G.133, V.134, S.135, L.136, H.140, Q.142 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.133, A:S.135, A:L.136, A:Q.142 Water bridges: A:N.127 Salt bridges: A:H.140 PO4.8: 5 residues within 4Å: Chain B: G.133, V.134, S.135, L.136, H.140 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.133, B:S.135, B:L.136 Salt bridges: B:H.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohshida, T. et al., Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum. Proteins (2020)

Release Date

2019-12-18

Peptides

Galactose-1-phosphate uridylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galactose-1-phosphate uridylyltransferase