SMTL ID : 6k78.2 (1 other biounit)

Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 8 residues within 4Å: Chain A: W.101, R.104, Y.132, T.261, F.264, S.298, I.299, F.300 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.104 PGE.3: 7 residues within 4Å: Chain B: W.101, Y.132, T.261, F.264, S.298, I.299, F.300 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.261, B:F.300 Water bridges: B:G.262

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: N.80, Q.81, R.82, E.83, W.101, Y.132, D.239, F.264 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:T.12, A:T.12, A:N.80, A:R.82, A:R.82, A:E.83, A:Y.132 GOL.4: 7 residues within 4Å: Chain B: Q.81, R.82, E.83, W.101, Y.132, D.239, F.264 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.82, B:R.82, B:E.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hokao, R. et al., Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1. To Be Published

Release Date

2020-06-10

Peptides

Glycerol kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Glycerol kinase

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