SMTL ID : 6k9z.1

STRUCTURE OF URIDYLYLTRANSFERASE MUTANT

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.30, C.33, H.86, H.138 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.30, A:C.33, A:H.86, A:H.138 ZN.2: 4 residues within 4Å: Chain A: C.170, C.173, H.211, H.264 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.170, A:C.173, A:H.211, A:H.264 ZN.7: 4 residues within 4Å: Chain B: C.30, C.33, H.86, H.138 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.30, B:C.33, B:H.86, B:H.138 ZN.8: 4 residues within 4Å: Chain B: C.170, C.173, H.211, H.264 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.170, B:C.173, B:H.211, B:H.264

2 x FE: FE (III) ION(Non-covalent)

FE.3: 4 residues within 4Å: Chain A: E.156, H.252, H.266, E.268 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.156, A:H.252, A:H.266, A:E.268, H2O.4 FE.9: 4 residues within 4Å: Chain B: E.156, H.252, H.266, E.268 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.156, B:H.252, B:H.266, B:E.268, H2O.11

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 6 residues within 4Å: Chain A: E.228, I.232, L.313, K.314, H.315, S.316 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.313 Hydrogen bonds: A:K.314, A:H.315, A:S.316, A:S.316 Salt bridges: A:H.315

2 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.5: 9 residues within 4Å: Chain A: P.31, F.32, N.50, R.51, Y.52, V.79, L.136, Q.142, Y.144 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.136 Hydrogen bonds: A:N.50, A:N.50, A:R.51, A:Y.52, A:Q.142, A:Q.142 Water bridges: A:N.127, A:Y.144 pi-Stacking: A:F.32 UDP.6: 10 residues within 4Å: Chain A: T.293 Chain B: P.31, F.32, N.50, R.51, Y.52, V.54, L.136, Q.142, Y.144 14 PLIP interactions: 11 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.136 Hydrogen bonds: B:N.50, B:N.50, B:R.51, B:Y.52, B:Q.142, B:Y.144, B:Y.144, A:T.293 Water bridges: B:N.127, B:N.127, A:R.274, A:K.280 pi-Stacking: B:F.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohshida, T. et al., Unique active site formation in a novel galactose 1-phosphate uridylyltransferase from the hyperthermophilic archaeon Pyrobaculum aerophilum. Proteins (2020)

Release Date

2019-12-18

Peptides

Galactose-1-phosphate uridylyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Galactose-1-phosphate uridylyltransferase