SMTL ID : 6kgh.1

Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis (apo-form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

3 x CO: COBALT (II) ION(Non-covalent)

CO.1: 1 residues within 4Å: Chain A: H.535 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.535, H2O.6, H2O.6, H2O.6, H2O.6 CO.2: 1 residues within 4Å: Chain A: H.528 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.528, H2O.6 CO.3: 1 residues within 4Å: Chain A: H.185 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.185, H2O.1, H2O.2

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: L.350, G.351, A.363, S.387, M.388, Q.392 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.351, A:Q.392, A:Q.392

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lu, Z. et al., Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation. Mol.Pharmacol. (2020)

Release Date

2020-03-11

Peptides

Penicillin-binding protein PbpB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Penicillin-binding protein PbpB

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