- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
NAG.3: 4 residues within 4Å:- Chain A: N.241, A.244, W.384, K.388
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.241, A:K.388
NAG.4: 6 residues within 4Å:- Chain A: N.205, S.208, L.210, A.214, V.215, Q.217
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.208, A:V.215, A:Q.217, A:Q.217
NAG.5: 3 residues within 4Å:- Chain A: N.332, S.334, V.335
2 PLIP interactions:2 interactions with chain A- Water bridges: A:N.332, A:D.336
NAG.6: 3 residues within 4Å:- Chain A: N.95, R.96, Q.568
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:N.95
- Hydrogen bonds: A:N.95, A:R.96, A:R.96, A:Q.568
- 15 x IOD: IODIDE ION(Non-functional Binders)
IOD.7: 2 residues within 4Å:- Chain A: P.236, T.425
Ligand excluded by PLIPIOD.8: 6 residues within 4Å:- Chain A: A.44, R.45, W.46, N.341, V.342, W.452
Ligand excluded by PLIPIOD.9: 2 residues within 4Å:- Chain A: F.309, W.530
Ligand excluded by PLIPIOD.10: 2 residues within 4Å:- Chain A: N.80, P.145
Ligand excluded by PLIPIOD.11: 5 residues within 4Å:- Chain A: E.363, R.397, I.559, T.560, K.561
Ligand excluded by PLIPIOD.12: 3 residues within 4Å:- Chain A: K.462, T.463, G.466
Ligand excluded by PLIPIOD.13: 2 residues within 4Å:- Chain A: H.377, H.429
Ligand excluded by PLIPIOD.14: 3 residues within 4Å:- Chain A: N.216, Q.217, F.229
Ligand excluded by PLIPIOD.15: 3 residues within 4Å:- Chain A: H.565, A.566, F.567
Ligand excluded by PLIPIOD.16: 5 residues within 4Å:- Chain A: H.109, R.255, E.258
- Ligands: HEM.1, PEO.22
Ligand excluded by PLIPIOD.17: 3 residues within 4Å:- Chain A: N.230, P.236, C.248
Ligand excluded by PLIPIOD.18: 1 residues within 4Å:- Chain A: R.202
Ligand excluded by PLIPIOD.19: 3 residues within 4Å:- Chain A: R.551, C.579, K.584
Ligand excluded by PLIPIOD.20: 2 residues within 4Å:- Chain A: F.229, I.387
Ligand excluded by PLIPIOD.21: 3 residues within 4Å:- Chain A: W.46, L.47, P.48
Ligand excluded by PLIP- 2 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
PEO.22: 4 residues within 4Å:- Chain A: Q.105, H.109
- Ligands: HEM.1, IOD.16
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.105, A:H.109
PEO.23: 3 residues within 4Å:- Chain A: F.113, R.255
- Ligands: HEM.1
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.255
- Water bridges: A:A.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, P.K. et al., Crystal structure of hydrogen peroxide bound bovine lactoperoxidase at 2.3 A resolution. To Be Published
- Release Date
- 2019-08-28
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Covalent)
- 1 x CA: CALCIUM ION(Non-covalent)
- 4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 15 x IOD: IODIDE ION(Non-functional Binders)
- 2 x PEO: HYDROGEN PEROXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, P.K. et al., Crystal structure of hydrogen peroxide bound bovine lactoperoxidase at 2.3 A resolution. To Be Published
- Release Date
- 2019-08-28
- Peptides
- Lactoperoxidase: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A