SMTL ID : 6kp5.1

crystal structure of Xanthine-guanine phosphoribosyltransferase (XGPRT) from Yersinia pestis in P21212 space group with sulphate ions in the active site

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

homo-tetramer

Ligands

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: S.37, R.38, G.39 Chain B: R.54 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.37, A:R.38, A:G.39 Salt bridges: A:R.38, B:R.54 Water bridges: B:R.54, B:R.54 SO4.2: 6 residues within 4Å: Chain A: V.92, D.93, T.94, G.95, G.96, T.97 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.93, A:T.94, A:T.94, A:G.95, A:G.96, A:T.97, A:T.97 Water bridges: A:A.98 SO4.3: 7 residues within 4Å: Chain B: L.91, V.92, D.93, T.94, G.95, G.96, T.97 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.93, B:T.94, B:G.95, B:G.96, B:T.97 Water bridges: B:G.95, B:A.98 SO4.4: 4 residues within 4Å: Chain A: R.54 Chain B: S.37, R.38, G.39 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Water bridges: A:R.54, A:R.54 Salt bridges: A:R.54, B:R.38 Hydrogen bonds: B:R.38, B:G.39 SO4.5: 4 residues within 4Å: Chain C: S.37, R.38, G.39 Chain D: R.54 7 PLIP interactions: 4 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:S.37, C:R.38, C:G.39 Salt bridges: C:R.38, D:R.54 Water bridges: D:R.54, D:R.54 SO4.6: 6 residues within 4Å: Chain C: V.92, D.93, T.94, G.95, G.96, T.97 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.93, C:T.94, C:T.94, C:G.95, C:G.96, C:T.97, C:T.97 Water bridges: C:A.98 SO4.7: 7 residues within 4Å: Chain D: L.91, V.92, D.93, T.94, G.95, G.96, T.97 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.93, D:T.94, D:G.95, D:G.96, D:T.97 Water bridges: D:G.95, D:A.98 SO4.8: 4 residues within 4Å: Chain C: R.54 Chain D: S.37, R.38, G.39 6 PLIP interactions: 3 interactions with chain D, 3 interactions with chain C Hydrogen bonds: D:R.38, D:G.39 Salt bridges: D:R.38, C:R.54 Water bridges: C:R.54, C:R.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lankipalli, S. et al., crystal structure of Xanthine-guanine phosphoribosyltransferase (XGPRT) from Yersinia pestis in P21212 space group. To be published

Release Date

2019-09-25

Peptides

Xanthine phosphoribosyltransferase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Xanthine phosphoribosyltransferase