SMTL ID : 6kvk.1

Crystal structure of UDP-Sm-SrUGT76G1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 18 residues within 4Å: Chain A: Q.24, G.25, N.28, Y.279, S.281, S.284, V.310, W.339, V.340, P.341, Q.342, H.357, G.359, W.360, N.361, S.362, E.365 Ligands: DX0.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.339 Hydrogen bonds: A:G.25, A:N.28, A:S.284, A:V.340, A:V.340, A:Q.342, A:W.360, A:N.361, A:N.361, A:S.362, A:E.365 Water bridges: A:Q.343, A:Q.343 Salt bridges: A:H.357, A:H.357

1 x DX0: Steviolmonoside(Non-covalent)

DX0.2: 14 residues within 4Å: Chain A: F.23, H.26, P.85, L.86, G.88, M.89, I.91, P.92, L.127, N.197, I.200, I.204, T.285 Ligands: UDP.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.92, A:L.127, A:I.200, A:I.204 Hydrogen bonds: A:P.85, A:G.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Z. et al., Structural Insights into the Catalytic Mechanism of a Plant Diterpene Glycosyltransferase SrUGT76G1. Plant Commun. (2020)

Release Date

2019-11-20

Peptides

UDP-glycosyltransferase 76G1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

UDP-glycosyltransferase 76G1

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