SMTL ID : 6l6r.2 (1 other biounit)

Crystal structure of LRP6 E1E2-SOST complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: R.413, N.415, T.417, M.418 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC- FUC: alpha-L-fucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-FUC-FUC.2: 3 residues within 4Å: Chain A: L.4, F.62, N.63 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.62

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: L.466, N.468 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 5 residues within 4Å: Chain A: S.96, E.97, N.99, D.120, Q.121 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:S.96, A:D.120 MG.5: 4 residues within 4Å: Chain A: L.82, A.83, I.125, H.254 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:I.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, J. et al., Sclerostin inhibits Wnt signaling through tandem interaction with two LRP6 ectodomains. Nat Commun (2020)

Release Date

2020-10-28

Peptides

Low-density lipoprotein receptor-related protein 6: A
Sclerostin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Low-density lipoprotein receptor-related protein 6

Sclerostin

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