SMTL ID : 6l6x.1

The structure of ScoE with substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-dimer

Ligands

2 x 7UC: (3~{R})-3-(2-hydroxy-2-oxoethylamino)butanoic acid(Non-covalent)

7UC.1: 12 residues within 4Å: Chain A: Y.116, Y.121, T.147, G.148, F.150, D.154, Y.155, F.157, Y.211, K.213, F.259, R.330 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.121 Hydrogen bonds: A:Y.116, A:Y.121, A:G.148, A:Y.155 Water bridges: A:K.213 Salt bridges: A:K.213, A:R.330 7UC.4: 12 residues within 4Å: Chain B: Y.116, Y.121, T.147, G.148, F.150, D.154, Y.155, F.157, Y.211, K.213, F.259, R.330 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Y.121 Hydrogen bonds: B:Y.116, B:Y.121, B:G.148, B:Y.155 Water bridges: B:K.213 Salt bridges: B:K.213, B:R.330

2 x FE2: FE (II) ION(Non-covalent)

FE2.2: 5 residues within 4Å: Chain A: H.152, D.154, H.315, R.330 Ligands: TAR.3 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.152, A:D.154, A:H.315, H2O.1, H2O.5 FE2.5: 5 residues within 4Å: Chain B: H.152, D.154, H.315, R.330 Ligands: TAR.6 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.152, B:D.154, B:H.315, H2O.11, H2O.14

2 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.3: 9 residues within 4Å: Chain A: T.147, G.148, H.152, I.167, R.177, H.315, A.317, S.328 Ligands: FE2.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.328 Water bridges: A:S.132, A:R.177, A:R.177, A:R.177, A:R.330 Salt bridges: A:H.152, A:R.177, A:H.315 TAR.6: 9 residues within 4Å: Chain B: T.147, G.148, H.152, I.167, R.177, H.315, A.317, S.328 Ligands: FE2.5 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.328 Water bridges: B:S.132, B:R.177, B:R.177, B:R.177, B:R.330 Salt bridges: B:H.152, B:R.177, B:H.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, T.Y. et al., Pathway from N-Alkylglycine to Alkylisonitrile Catalyzed by Iron(II) and 2-Oxoglutarate-Dependent Oxygenases. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-03-04

Peptides

ScoE protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ScoE protein

Related Entries With Identical Sequence