6l70.1 | SWISS-MODEL Template Library

SMTL ID : 6l70.1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

homo-dimer

Ligands

2 x K36: (1S,2S)-2-({N-[(benzyloxy)carbonyl]-L-leucyl}amino)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid(Covalent)

K36.1:	20 residues within 4Å: Chain A: L.27, H.41, T.47, I.51, Y.53, F.139, I.140, N.141, G.142, A.143, C.144, H.162, Q.163, L.164, E.165, H.171, D.186, Q.187, P.188 Chain B: A.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:H.41, A:T.47 Hydrogen bonds: A:F.139, A:G.142, A:A.143, A:C.144, A:H.162, A:Q.163, A:E.165, A:E.165, A:H.171
K36.2:	20 residues within 4Å: Chain A: A.1 Chain B: L.27, H.41, I.51, Y.53, F.139, I.140, N.141, G.142, A.143, C.144, H.162, Q.163, L.164, E.165, G.167, H.171, D.186, Q.187, P.188 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:H.41, B:L.164, B:E.165 Hydrogen bonds: B:H.41, B:F.139, B:G.142, B:A.143, B:C.144, B:H.162, B:Q.163, B:E.165

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Ye, G. et al., Structural Basis for Inhibiting Porcine Epidemic Diarrhea Virus Replication with the 3C-Like Protease Inhibitor GC376. Viruses (2020)

Release Date

2020-04-29

Peptides

PEDV main protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B