SMTL ID : 6l8p.1

Crystal structure of RidA from Antarctic bacterium Psychrobacter sp. PAMC 21119

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-trimer

Ligands

3 x MLI: MALONATE ION(Non-functional Binders)

MLI.1: 10 residues within 4Å: Chain A: F.105, R.123, A.124, A.125 Chain B: V.35, Y.38, G.52, L.54, P.132, E.138 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.38 Hydrogen bonds: B:Y.38, B:G.52, A:R.123 Salt bridges: A:R.123 MLI.2: 10 residues within 4Å: Chain B: F.105, R.123, A.124, A.125 Chain C: V.35, Y.38, G.52, L.54, P.132, E.138 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:R.123, C:Y.38 Salt bridges: B:R.123 Hydrophobic interactions: C:Y.38 MLI.3: 10 residues within 4Å: Chain A: V.35, Y.38, G.52, L.54, P.132, E.138 Chain C: F.105, R.123, A.124, A.125 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:Y.38 Hydrogen bonds: A:Y.38, A:G.52, C:R.123 Salt bridges: C:R.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kwon, S. et al., Crystal structure of the reactive intermediate/imine deaminase A homolog from the Antarctic bacterium Psychrobacter sp. PAMC 21119. Biochem.Biophys.Res.Commun. (2020)

Release Date

2019-12-18

Peptides

RidA family protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

RidA family protein