SMTL ID : 6ldy.1 (1 other biounit)

Structure antibody D6 in complex with methylated peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x CA: CALCIUM ION(Non-functional Binders)

CA.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: E.45, Y.46 Chain B: G.102, F.103 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain B: Q.81, D.83 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.81 Water bridges: B:D.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ishii, M. et al., Structural basis for antigen recognition by methylated lysine-specific antibodies. J.Biol.Chem. (2020)

Release Date

2020-11-25

Peptides

Fab heavy chain: A
Fab light chain: B
Methylated peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fab heavy chain

Fab light chain

Methylated peptide

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