SMTL ID : 6lis.1 (1 other biounit)

ASFV dUTPase in complex with dUMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

3 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 11 residues within 4Å: Chain A: I.68, N.85, G.88, L.89, I.90, D.91, Y.94, L.98, M.99 Chain B: R.71, S.72 16 PLIP interactions: 7 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:Y.94 Hydrogen bonds: A:N.85, A:L.89, A:D.91, A:D.91, A:M.99, A:M.99, B:S.72, B:S.72, B:S.72 Water bridges: B:R.71, B:R.71, B:S.73, B:Q.120, B:Q.120 Salt bridges: B:R.71 UMP.2: 9 residues within 4Å: Chain B: N.85, G.88, L.89, I.90, D.91, Y.94, M.99 Chain C: R.71, S.72 15 PLIP interactions: 7 interactions with chain C, 8 interactions with chain B Hydrogen bonds: C:S.72, C:S.72, C:S.72, C:Q.120, B:N.85, B:L.89, B:D.91, B:D.91, B:M.99, B:M.99 Water bridges: C:S.73, C:Q.120, B:D.91 Salt bridges: C:R.71 Hydrophobic interactions: B:Y.94 UMP.3: 12 residues within 4Å: Chain A: R.71, S.72, Q.120 Chain C: I.68, N.85, G.88, L.89, I.90, D.91, Y.94, L.98, M.99 14 PLIP interactions: 7 interactions with chain A, 7 interactions with chain C Hydrogen bonds: A:S.72, A:S.72, A:S.72, A:Q.120, A:Q.120, C:N.85, C:L.89, C:D.91, C:D.91, C:M.99, C:M.99 Water bridges: A:R.71, A:S.73 Hydrophobic interactions: C:Y.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, R. et al., Structural comparisons of host and African swine fever virus dUTPases reveal new clues for inhibitor development. J.Biol.Chem. (2020)

Release Date

2020-11-11

Peptides

E165R: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

E165R

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