SMTL ID : 6lr6.2 (1 other biounit)

The crystal structure of human cytoplasmic LRS

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

monomer

Ligands

1 x LSS: 5'-O-(L-leucylsulfamoyl)adenosine(Non-covalent)

LSS.1: 23 residues within 4Å: Chain A: F.72, P.73, Y.74, P.75, Y.76, G.84, H.85, S.88, H.113, H.273, S.615, L.616, S.619, Y.622, R.693, S.695, G.696, D.698, L.699, H.703, G.730, H.731, L.732 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.74, A:L.616, A:Y.622 Hydrogen bonds: A:Y.74, A:Y.76, A:S.88, A:H.113, A:S.695, A:G.696, A:D.698, A:L.732 Salt bridges: A:H.85 pi-Stacking: A:H.731, A:H.731

1 x A2H: 4-Chloro-3-aminomethyl-7-[ethoxy]-3H-benzo[C][1,2]oxaborol-1-ol modified adenosine(Non-covalent)

A2H.2: 16 residues within 4Å: Chain A: Y.286, A.314, T.315, L.316, R.317, T.320, I.402, K.403, K.406, V.411, T.412, V.414, D.417, S.418, D.421, K.486 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:K.486 Hydrogen bonds: A:Q.284, A:Y.286, A:T.315, A:L.316, A:K.403, A:K.403, A:S.418, A:D.421

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, R.J. et al., Molecular basis of the multifaceted functions of human leucyl-tRNA synthetase in protein synthesis and beyond. Nucleic Acids Res. (2020)

Release Date

2020-03-25

Peptides

Leucine--tRNA ligase, cytoplasmic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Leucine--tRNA ligase, cytoplasmic

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