SMTL ID : 6m7i.1

Crystal structure of KPC-2 with compound 3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

4 x J84: 1-(2,4-dichlorophenyl)-4-(1H-tetrazol-5-yl)-1H-pyrazol-5-amine(Non-covalent)

J84.1: 8 residues within 4Å: Chain A: A.226, W.247, P.248, G.250, R.251, A.252, P.253 Ligands: GOL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.250, A:R.251, A:R.251 Water bridges: A:A.226, A:A.226 J84.2: 9 residues within 4Å: Chain A: L.163, E.164, N.166, S.167, T.233, C.234, G.235, V.236 Ligands: J84.3 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.166 Hydrogen bonds: A:C.234 J84.3: 10 residues within 4Å: Chain A: S.66, W.101, S.126, N.128, L.163, K.230, T.231, G.232, T.233 Ligands: J84.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.101, A:L.163 Hydrogen bonds: A:S.66, A:S.126, A:S.126, A:N.128, A:K.230, A:T.233 Water bridges: A:S.66 J84.4: 4 residues within 4Å: Chain A: W.101, P.103, K.107, Y.125 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: Q.201, K.208, A.226, W.247 Ligands: J84.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.201, A:Q.201, A:K.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torelli, N.J. et al., Active-Site Druggability of Carbapenemases and Broad-Spectrum Inhibitor Discovery. Acs Infect Dis. (2019)

Release Date

2019-04-17

Peptides

Carbapenem-hydrolyzing beta-lactamase KPC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbapenem-hydrolyzing beta-lactamase KPC

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