SMTL ID : 6m9c.1

PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR Pseudotyrostatin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x IVA- TYR- TYE: Pseudotyrostatin(Non-covalent)

IVA-TYR-TYE.1: 20 residues within 4Å: Chain A: I.33, D.72, Q.74, G.75, E.78, W.79, S.131, L.132, G.133, W.134, S.165, G.167, D.168, E.169, E.173, R.177, S.188, G.283, T.284, S.285 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.33, A:W.79, A:L.132, A:W.134 Hydrogen bonds: A:D.72, A:D.72, A:S.131, A:G.133, A:D.168, A:R.177, A:R.177, A:S.188, A:S.285 Water bridges: A:R.177, A:R.177, A:R.177

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.326, V.327, K.328, G.342, G.344, D.346 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.326, A:V.327, A:G.342, A:G.344, A:D.346, H2O.2

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: Y.185, G.338, Y.339 6 PLIP interactions: 6 interactions with chain A Water bridges: A:Y.185, A:Y.185, A:Y.185, A:N.340, A:N.340, A:N.340 SO4.4: 2 residues within 4Å: Chain A: Q.146, R.150 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.146 Water bridges: A:R.150, A:R.150 Salt bridges: A:R.150 SO4.5: 4 residues within 4Å: Chain A: P.194, P.242, S.243, W.244 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.194

5 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 4 residues within 4Å: Chain A: S.243, W.244, S.246, V.247 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.244 ACY.7: 4 residues within 4Å: Chain A: T.251, W.345, D.346, Y.347 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.347 Water bridges: A:Y.347 ACY.8: 4 residues within 4Å: Chain A: L.145, Y.238, E.239, S.240 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.239 ACY.9: 5 residues within 4Å: Chain A: S.312, Y.362, N.366, G.367, F.368 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.367 ACY.10: 3 residues within 4Å: Chain A: S.37, S.70, D.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.37, A:D.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wlodawer, A. et al., Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase. Biochemistry (2001)

Release Date

2018-10-24

Peptides

SEDOLISIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SEDOLISIN

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