SMTL ID : 6md2.2 (1 other biounit)

Crystal Structure of Human PPARgamma Ligand Binding Domain in Complex with GW9662 and Arachidonic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GW9: 2-chloro-5-nitro-N-phenylbenzamide(Non-covalent)

GW9.1: 13 residues within 4Å: Chain A: F.80, C.83, Q.84, R.86, S.87, H.121, I.124, Y.125, L.128, F.161, H.247, L.251 Ligands: ACD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.80, A:Q.84, A:R.86, A:I.124, A:L.128, A:F.161 Hydrogen bonds: A:C.83

1 x ACD: ARACHIDONIC ACID(Non-covalent)

ACD.2: 13 residues within 4Å: Chain A: K.63, H.64, I.79, G.82, C.83, F.85, R.86, E.89, V.137, I.139, S.140, E.141 Ligands: GW9.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.79, A:F.85, A:R.86, A:R.86, A:R.86, A:E.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shang, J. et al., Cooperative cobinding of synthetic and natural ligands to the nuclear receptor PPAR gamma. Elife (2018)

Release Date

2019-01-09

Peptides

Peroxisome proliferator-activated receptor gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Peroxisome proliferator-activated receptor gamma

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