SMTL ID : 6me3.1

XFEL crystal structure of human melatonin receptor MT1 in complex with 2-phenylmelatonin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x JEY: N-[2-(5-methoxy-2-phenyl-1H-indol-3-yl)ethyl]acetamide(Non-covalent)

JEY.1: 16 residues within 4Å: Chain A: A.95, M.98, G.99, V.102, V.150, N.153, L.159, T.169, F.170, Q.172, V.182, L.432, N.433, Y.459, A.462, Y.463 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.102, A:V.150, A:L.159, A:F.170, A:L.432, A:Y.459, A:A.462, A:Y.463 Hydrogen bonds: A:A.95, A:T.169, A:Q.172

1 x OLA: OLEIC ACID(Non-covalent)

OLA.2: 6 residues within 4Å: Chain A: Y.198, W.202, V.205, F.415, F.419 Ligands: PEG.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.415, A:F.419, A:F.419

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 4 residues within 4Å: Chain A: R.209, K.408, F.412 Ligands: OLA.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stauch, B. et al., Structural basis of ligand recognition at the human MT1melatonin receptor. Nature (2019)

Release Date

2019-04-24

Peptides

chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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chimera protein of Melatonin receptor type 1A and GlgA glycogen synthase

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