SMTL ID : 6mek.2 (1 other biounit)

Crystal structure of Hepatitis C virus envelope glycoprotein E2 core in complex with human antibodies HEPC3 and HEPC46

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: C.84, G.85, N.130 Chain C: Y.27, I.28 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 5 residues within 4Å: Chain A: S.39, S.40, P.43, C.210, N.213 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 5 residues within 4Å: Chain A: T.91, N.146, T.148, F.150, K.152 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 3 residues within 4Å: Chain A: L.12, N.13, Y.117 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 4 residues within 4Å: Chain A: N.20, S.22 Chain D: Y.102 Chain E: Y.49 4 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E, 1 interactions with chain A Hydrophobic interactions: D:Y.102 Hydrogen bonds: E:Y.49, E:Y.49, A:S.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flyak, A.I. et al., HCV Broadly Neutralizing Antibodies Use a CDRH3 Disulfide Motif to Recognize an E2 Glycoprotein Site that Can Be Targeted for Vaccine Design. Cell Host Microbe (2018)

Release Date

2018-11-21

Peptides

E2 GLYCOPROTEIN: A
HEPC46 Light Chain: B
HEPC46 Heavy Chain: C
HEPC3 Heavy Chain: D
HEPC3 Light Chain: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

C
F

D
H

E
L

E2 GLYCOPROTEIN

HEPC46 Light Chain

HEPC46 Heavy Chain

HEPC3 Heavy Chain

HEPC3 Light Chain

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