SMTL ID : 6msn.1

Crystal structure of cytosolic fumarate hydratase from Leishmania major in a complex with inhibitor thiomalate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

homo-dimer

Ligands

2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 14 residues within 4Å: Chain A: C.169, Q.170, D.171, G.250, S.253, A.287, C.288, C.382, S.383, A.384, P.502, K.527, G.551 Ligands: JYD.2 4 PLIP interactions: 4 interactions with chain A, Salt bridges: A:D.171 Metal complexes: A:C.169, A:C.288, A:C.382 SF4.3: 14 residues within 4Å: Chain B: C.169, Q.170, D.171, G.250, S.253, A.287, C.288, C.382, S.383, A.384, P.502, K.527, G.551 Ligands: JYD.4 4 PLIP interactions: 4 interactions with chain B, Salt bridges: B:D.171 Metal complexes: B:C.169, B:C.288, B:C.382

2 x JYD: (2S)-2-sulfanylbutanedioic acid(Non-covalent)

JYD.2: 12 residues within 4Å: Chain A: Q.170, D.171, R.209, G.252, R.457, T.503, T.504, R.507, K.527 Chain B: H.370, A.372 Ligands: SF4.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:D.171 Hydrogen bonds: A:Q.170, A:D.171, A:T.504 Water bridges: A:T.503 Salt bridges: A:R.209, A:R.457, A:R.457, A:R.507, A:K.527 JYD.4: 12 residues within 4Å: Chain A: H.370, A.372 Chain B: Q.170, D.171, R.209, G.252, R.457, T.503, T.504, R.507, K.527 Ligands: SF4.3 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:D.171 Hydrogen bonds: B:Q.170, B:D.171, B:T.504 Water bridges: B:R.457 Salt bridges: B:R.209, B:R.457, B:R.457, B:R.507, B:K.527, A:H.370

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feliciano, P.R. et al., Crystal Structures of Fumarate Hydratases from Leishmania major in a Complex with Inhibitor 2-Thiomalate. ACS Chem. Biol. (2019)

Release Date

2019-01-30

Peptides

fumarate hydratase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

fumarate hydratase

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